Primary Immunodeficiency Symptoms: 8 Signs To Watch For

Medically reviewed by Marcela Castillo-Rama, MD, PhD
Posted on September 2, 2025

Key Takeaways

  • Primary immunodeficiency is a group of over 500 inherited conditions that affect the immune system's ability to fight infections.
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Primary immunodeficiency (PI) is a general term for over 500 different inherited conditions that affect the immune system. All primary immunodeficiency disorders are caused by mutations (changes) in specific genes. Because parts of the immune system aren’t working correctly, or some of the body’s immune defenses are missing, people with PI often have trouble fighting infections.

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PI has many other symptoms beyond frequent infections. Each PI condition is unique, and the impact of someone’s condition on their health and daily life can range from mild to severe. In this article, we’ll cover some key primary immunodeficiency signs.

When Do Symptoms of Primary Immunodeficiency Appear?

People can be diagnosed with PI at any point in their lives. However, many severe PI conditions tend to be diagnosed early because they cause noticeable symptoms. Less severe PI conditions, or those whose symptoms can be confused with other health issues, might be diagnosed later in life. Learning the general symptoms of PI is important if you suspect you or a loved one might have one of these conditions. Sometimes, PI symptoms are mistaken for common childhood illnesses or adult infections. Early diagnosis and treatment can make a big difference in quality of life and symptom management.

Warning Signs of Primary Immunodeficiency

Below, we describe a few of the main signs of primary immunodeficiency conditions. Not every PI will cause them all. If you or your loved one is experiencing some of these signs and are worried about the possibility of having a PI, bring the topic up with a healthcare provider. They’ll be able to order tests that could lead to a diagnosis and help you understand what’s going on.

1. Frequent, Severe Infections

The most well-known symptom of PI is frequent, recurrent, or severe infections. However, it can be hard to tell exactly what this means for an individual. Not everyone with PI has more infections than the general population, but their infections might be deeper or more severe.

The medical community has developed a list of 10 warning signs of PI in children and adults. Nearly all of these warning signs have to do with where and how often infections occur.

10 Warning Signs of Primary Immunodeficiency in Children

The following are red flags for possible PI in babies and children. If your child has two or more of these warning signs in a year, talk to your child’s pediatrician about testing for primary immunodeficiency.

  1. A family history of primary immunodeficiency
  2. Four or more ear infections per year
  3. Two or more severe sinus infections per year
  4. Two or more months of antibiotic treatment which doesn’t work to resolve the infection
  5. Need for intravenous (IV) antibiotics to clear infections
  6. Two or more pneumonia infections in a year
  7. Recurring deep organ or skin infections
  8. Long-lasting fungal infections in the mouth (called thrush) or on the skin
  9. Two or more severe infections, like sepsis or meningitis
  10. Failure to gain weight or growth delays

Some children with primary immunodeficiency might not show these exact warning signs, so doctors also check family history and use genetic tests to help make a diagnosis.

10 Warning Signs of Primary Immunodeficiency in Adults

Below are the red flags for PI in adults. Talk to your healthcare provider if you or a loved one has two or more of these warning signs:

  1. A family history of primary immunodeficiency
  2. Two or more ear infections per year
  3. Two or more sinus infections per year, without known allergies
  4. One pneumonia infection each year for more than one year
  5. Recurring viral infections like colds, warts, or herpes
  6. Chronic diarrhea that causes weight loss
  7. Long-lasting fungal infections in the mouth (called thrush) or on the skin
  8. Recurring deep skin or organ infections
  9. Infection with tuberculosis-like bacteria that is usually harmless
  10. Repeated need for IV antibiotics to clear infections

Adults with primary immunodeficiency may have other problems causing skin, lung, ear, nose, throat, liver, or stomach issues — as well as autoimmune illnesses. These can occur even if a person doesn’t get many infections.

White, patchy plaques on the inside of the cheek and gums, consistent with oral thrush.
White patches inside the mouth are signs of thrush, a fungal infection which some people with primary immunodeficiency have a greater risk for. (CC BY-NC-ND 4.0/DermNet)


2. Persistent Fatigue

Persistent fatigue (extreme tiredness that doesn’t improve with rest) is a common symptom of many PI conditions that can significantly affect quality of life. In a recent survey of Americans with PI, about 18 percent reported being fatigued. In the general population, only about 7 percent of people report this symptom. Two PI conditions, antibody deficiency disorders and common variable immunodeficiency (CVID), are especially associated with high levels of reported fatigue.

3. Autoimmune Symptoms

Many people with PI also have autoimmune issues, or disorders where the body’s immune system attacks its own cells and tissues. One study of people with CVID found that 26 percent of respondents had at least one autoimmune disorder as well. The autoimmune issues associated with PI can be quite varied.

The most common autoimmune issue related to PI is a blood disorder called autoimmune cytopenia. The symptoms of autoimmune cytopenia include:

  • Easy bruising
  • Bleeding that’s slow to stop
  • Anemia (low red blood cell levels)

Other possible autoimmune conditions include skin issues, such as psoriasis, and rheumatoid arthritis, which causes joint pain and swelling.

Red, scaly, and thickened plaques with silvery-white scaling on the back of the hand of a person with light skin, characteristic of psoriasis.
Psoriasis is an autoimmune condition that creates scaly patches on the skin. People with primary immunodeficiency may be at a greater risk for psoriasis. (Adobe Stock)


4. Digestive Issues

Autoimmune disorders can also affect the digestive system, including your mouth, esophagus, stomach, small intestine, liver, and colon. About one-third of people with PI experience digestive issues. When the lining of these organs is attacked, it causes inflammation and pain. Digestive autoimmune disorders can also make it more difficult for your body to absorb nutrients from food and maintain a stable weight.

Some of the symptoms of PI-related digestive issues include:

  • Diarrhea that doesn’t go away
  • Stomach pain
  • Urgent pooping after eating
  • Unintentional weight loss

5. Swollen Lymph Nodes

The lymph nodes are small glands that filter fluid called lymph. This lymph fluid picks up germs, dead cells, and waste from your tissues. The lymph nodes contain immune cells. The immune cells act as a security checkpoint to remove damaged cells and foreign substances.

You have hundreds of lymph nodes scattered throughout your organs and tissues. When you’re fighting an infection, lymph nodes near the site of the infection might swell as they work overtime to get rid of the germs. This is a normal process. For example, when you have an upper respiratory infection, you might feel the lymph nodes on either side of your jaw become swollen and tender.

In people with some types of PI, lymph nodes can swell because of a buildup of immune cells, even when they’re not sick. This is particularly common in CVID.

6. Enlarged Spleen

The spleen is another important immune organ. It’s located on the left side of your body above your stomach. It filters toxins and germs from the blood and makes white blood cells and antibodies.

Normally, an adult's spleen is about the size of an avocado. In some types of PI, the spleen becomes enlarged as it fills with immune cells. For example, about 25 percent of people with CVID have an enlarged spleen. An enlarged spleen doesn’t always cause symptoms. However, here are some possible signs and symptoms of a swollen spleen:

  • Pain in the upper left side of your stomach
  • Loss of appetite or feeling full even if you haven’t eaten
  • Ability to feel your spleen when pressing above your stomach

7. Poor Growth in Children

In babies and children, primary immunodeficiency disorders can sometimes lead to poor growth or weight gain for their age. This is also called “failure to thrive.” There are many reasons why a PI condition might make it hard for the body to grow and develop. For example, recurrent infections cause inflammation that interferes with normal growth signals. Autoimmune digestive issues can make it difficult to absorb enough nutrients from food. This can lead to malnutrition, fatigue, and other complications. Additionally, some PI conditions also affect hormones, which can be important for growth.

8. Family History of Immune Disorders

Having a family history of primary immunodeficiency or other immune problems is a strong warning sign of possible PI. This is because the genetic mutations that cause PI can run in families and be passed down to children.

Even if you don’t know if a family member was diagnosed with PI, there are a few signs of a possible undiagnosed PI condition. These include:

  • Nonaccidental infant or early childhood death
  • Unexplained enlarged spleen, liver, or lymph nodes
  • Frequent, recurring, severe, or uncommon infections
  • Autoimmune diagnoses like arthritis, inflammatory bowel disease, or lupus
  • Blood cancer diagnoses like leukemia or lymphoma

If you notice any of the signs in this article, you may want to talk to your doctor about testing for primary immunodeficiency. They can help you get to the root cause of your symptoms.

Talk With Others Who Understand

On myPIteam, people come together to learn more about life with primary immunodeficiency disorders.

Have you or a loved one been diagnosed with primary immunodeficiency? Which of the signs and symptoms listed here have you experienced? Share your tips and experiences in a comment below.

References
  1. Human Inborn Errors of Immunity: 2022 Update on the Classification From the International Union of Immunological Societies Expert Committee — Journal of Clinical Immunology
  2. Changing the Lives of People With Primary Immunodeficiencies (PI) With Early Testing and Diagnosis — Frontiers in Immunology
  3. About Primary Immunodeficiency (PI) — Centers for Disease Control and Prevention
  4. Primary Immunodeficiency — Mayo Clinic
  5. Extended List of Warning Signs in Qualification to Diagnosis and Treatment of Inborn Errors of Immunity in Children and Young Adults — Journal of Clinical Medicine
  6. 10 Warning Signs of Primary Immunodeficiency — Immunodeficiency Canada
  7. Genetic Testing — Immune Deficiency Foundation
  8. Diagnosing Primary Immunodeficiency — Immune Deficiency Foundation
  9. PI Conference Explores Links Between Fatigue and PI — Immune Deficiency Foundation
  10. Increased Incidence of Fatigue in Patients With Primary Immunodeficiency Disorders: Prevalence and Associations Within the US Immunodeficiency Network Registry — Journal of Clinical Immunology
  11. Autoimmunity in PI Causes Blood Disorders, GI Issues, Lung Problems — Immune Deficiency Foundation
  12. Autoimmunity and PIDs — Immunodeficiency UK
  13. Inborn Errors of Immunity (Primary Immunodeficiencies): Overview of Management — Wolters Kluwer UpToDate
  14. Rheumatoid Arthritis — Cleveland Clinic
  15. Autoimmunity — Immune Deficiency Foundation
  16. Gastrointestinal Disorders Common in Primary Immunodeficiency — Immune Deficiency Foundation
  17. Lymph Nodes and Cancer — American Cancer Society
  18. Common Variable Immune Deficiency — MedlinePlus
  19. Spleen — Cleveland Clinic
  20. Influence of Splenomegaly and Splenectomy on the Immune Cell Profile of Patients With Common Variable Immunodeficiency Disease — Journal of Clinical Immunology
  21. Enlarged Spleen — Cleveland Clinic​​​​​​
  22. Repercussions of Inborn Errors of Immunity on Growth — Jornal de Pediatria
  23. Why and How To Collect a Family Medical History — Immune Deficiency Foundation

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